Thomas Wittenberg
PD Dr.-Ing. Thomas Wittenberg
Publications
2023
3D segmentation of plant root systems using spatial pyramid pooling and locally adaptive field-of-view inference
In: Frontiers in Plant Science 14 (2023), Article No.: 1120189
ISSN: 1664-462X
DOI: 10.3389/fpls.2023.1120189
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2022
MitoDet: Simple and Robust Mitosis Detection
24th International Conference on Medical Image Computing and Computer-Assisted Intervention, MICCAI 2021 (Strasbourg, September 27, 2021 - October 1, 2021)
In: Marc Aubreville, David Zimmerer, Mattias Heinrich (ed.): Lecture Notes in Computer Science (including subseries Lecture Notes in Artificial Intelligence and Lecture Notes in Bioinformatics) 2022
DOI: 10.1007/978-3-030-97281-3_7
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YOLO networks for polyp detection: A human-in-the-loop training approach
In: Current Directions in Biomedical Engineering 8 (2022), p. 277-280
ISSN: 2364-5504
DOI: 10.1515/cdbme-2022-1071
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Automatic detection of foreign objects and contaminants in colonoscopic video data using deep learning
In: Current Directions in Biomedical Engineering 8 (2022), p. 321-324
ISSN: 2364-5504
DOI: 10.1515/cdbme-2022-1082
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Electromagnetic tool for the endoscopic creation of colon anastomoses-development and feasibility assessment of a novel anastomosis compression implant approach
In: International Journal of Computer Assisted Radiology and Surgery (2022)
ISSN: 1861-6410
DOI: 10.1007/s11548-022-02722-z
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A concept and technical requirements for the Temi platform supporting care and nursing
In: Current Directions in Biomedical Engineering 8 (2022), p. 241-244
ISSN: 2364-5504
DOI: 10.1515/cdbme-2022-1062
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Fast whole-slide cartography in colon cancer histology using superpixels and CNN classification
In: Journal of Medical Imaging 9 (2022)
ISSN: 2329-4310
DOI: 10.1117/1.JMI.9.2.027501
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Evaluation of methods for 3D imaging and analysis of vascularisation in biopreparations
In: Current Directions in Biomedical Engineering 8 (2022), p. 61-64
ISSN: 2364-5504
DOI: 10.1515/cdbme-2022-1017
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2021
Evaluation of an algorithm for optical pulse detection in children for application to the Pepper robot
In: Current Directions in Biomedical Engineering 7 (2021), p. 484-487
ISSN: 2364-5504
DOI: 10.1515/cdbme-2021-2123
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Exploring Flood Filling Networks for Instance Segmentation of XXL-Volumetric and Bulk Material CT Data
In: Journal of Nondestructive Evaluation 40 (2021), Article No.: 1
ISSN: 0195-9298
DOI: 10.1007/s10921-020-00734-w
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Panoramic Imaging Assessment of Different Bladder Phantoms – An Evaluation Study
In: Urology (2021)
ISSN: 0090-4295
DOI: 10.1016/j.urology.2021.05.036
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A Geometric and Textural Model of the Colon as Ground Truth for Deep Learning-based 3D-reconstruction
German Workshop on Medical Image Computing, 2021 (Regensburg, March 7, 2021 - March 9, 2021)
In: Christoph Palm, Heinz Handels, Klaus Maier-Hein, Thomas M. Deserno, Andreas Maier, Thomas Tolxdorff (ed.): Informatik aktuell 2021
DOI: 10.1007/978-3-658-33198-6_73
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Electromagnets for an endoscopic anastomosis tool in the colon
In: Current Directions in Biomedical Engineering 7 (2021), Article No.: 20211110
ISSN: 2364-5504
DOI: 10.1515/cdbme-2021-1009
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2020
A Concept for Context Awareness in SmartEnvironments
In: Current Directions in Biomedical Engineering (2020)
ISSN: 2364-5504
DOI: 10.1515/cdbme-2020-3098
URL: https://www.degruyter.com/document/doi/10.1515/cdbme-2020-3098/html
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Haptic Rendering of Soft-Tissue for Training Surgical Procedures at the Larynx
Algorithmen – Systeme – Anwendungen (Berlin, March 15, 2020 - March 17, 2020)
In: In: Tolxdorff T., Deserno T., Handels H., Maier A., Maier-Hein K., Palm C. (eds) (ed.): Bildverarbeitung für die Medizin 2020, Informatik aktuell, Wiesbaden: 2020
DOI: 10.1007/978-3-658-29267-6_76
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Deep-learning based reconstruction of the stomach from monoscopic video data
In: Current Directions in Biomedical Engineering 6 (2020)
ISSN: 2364-5504
DOI: 10.1515/cdbme-2020-3012
URL: https://www.degruyter.com/document/doi/10.1515/cdbme-2020-3012/html
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2019
Automatic Detection of Tumor Buds in Pan-Cytokeratin Stained Colorectal Cancer Sections by a Hybrid Image Analysis Approach
European Congress on Digital Pathology (Warwick , UK, April 10, 2019 - April 13, 2019)
In: Reyes-Aldasoro CC, Janowczyk A, Veta M, Bankhead P, Sirinukunwattana K (ed.): Digital Pathology, Cham: 2019
DOI: 10.1007/978-3-030-23937-4_10
URL: https://link.springer.com/chapter/10.1007/978-3-030-23937-4_10
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Automated polyp detection in the colorectum: a prospective study (with videos)
In: Gastrointestinal Endoscopy 89 (2019), p. 576-582.e1
ISSN: 0016-5107
DOI: 10.1016/j.gie.2018.09.042
URL: https://www.ncbi.nlm.nih.gov/pubmed/30342029
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Automated detection of bone splinters in DEXA phantoms using deep neural networks
In: Current Directions in Biomedical Engineering 5 (2019), p. 281-283
ISSN: 2364-5504
DOI: 10.1515/cdbme-2019-0071
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2018
Stitching Pathological Tissue Images using DOP Feature Tracking
Bildverarbeitung für die Medizin (Erlangen)
In: Maier A, Deserno TM, Handels H, Maier-Hein KH, Palm C, Tolxdorff T (ed.): Bildverarbeitung für die Medizin 2018, Berlin, Heidelberg: 2018
DOI: 10.1007/978-3-662-56537-7_84
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A haptic model for virtual petrosal bone milling
Proc’s 17. Jahrestagung der Deut¬schen Ge¬sellschaft für Computer- und Roboterassistierte Chirurgie (CURAC 2018) (Leipzig, September 14, 2018 - September 16, 2018)
Open Access: https://www.curac.org/images/advportfoliopro/images/CURAC2018/CURAC 2018 Tagungsband.pdf
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CT-basiertes virtuelles Fräsen am Felsenbein --- Bild- und haptische Wiederholfrequenzen bei unterschiedlichen Rendering Methoden
Workshop Bildverarbeitung für die Medizin 2018 (Erlangen, March 11, 2018 - March 13, 2018)
In: Andreas Maier, Thomas M. Deserno, Heinz Handels, Klaus Hermann Maier-Hein, Christoph Palm,Thomas Tolxdorff (ed.): Bildverarbeitung für die Medizin 2018 Algorithmen - Systeme - Anwendungen. Proceedings des Workshops vom 11. bis 13. März 2018 in Erlangen, Heidelberg: 2018
DOI: 10.1007/978-3-662-56537-7_51
URL: https://link.springer.com/chapter/10.1007/978-3-662-56537-7_51
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Panoramic Endoscopy of the Stomach: First results from Phantom and Patient Data.
17. Jahrestagung der Deutschen Gesellschaft für Computer- und Roboterassistierte Chirurgie (CURAC 2018) (Leipzig, September 14, 2018 - September 16, 2018)
In: Thomas Neumuth, Andreas Melzer, Claire Chalopin (ed.): Proc's 17. Jahrestagung der Deutschen Gesellschaft für Computer- und Roboterassistierte Chirurgie (CURAC 2018) 2018
Open Access: https://www.curac.org/images/advportfoliopro/images/CURAC2018/CURAC 2018 Tagungsband.pdf
URL: https://www.curac.org/images/advportfoliopro/images/CURAC2018/CURAC 2018 Tagungsband.pdf
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3D haptic training system for micorsurgery of the ear – BMBF-Haptivist
In: Laryngo-Rhino-Otologie 97 (2018), p. 10741
ISSN: 0935-8943
DOI: 10.1055/s-0038-1640365
URL: https://www.thieme-connect.de/products/ejournals/abstract/10.1055/s-0038-1640365
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Force-Feedback Assisted Bone Drilling Simulation Based on CT Data
Workshop Bildverarbeitung für die Medizin 2018, (Erlangen, March 11, 2018 - March 13, 2018)
In: Andreas Maier, Thomas Deserno, Heinz Handels, Klaus Maier-Hein, Christoph Palm, Thomas Tolxdorff (ed.): Bildverarbeitung für die Medizin 2018 Algorithmen - Systeme - Anwendungen. Proceedings des Workshops vom 11. bis 13. März 2018 in Erlangen, Heidelberg: 2018
DOI: 10.1007/978-3-662-56537-7_78
URL: https://link.springer.com/chapter/10.1007/978-3-662-56537-7_78
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IFN-γ-response mediator GBP-1 represses human cell proliferation by inhibiting the Hippo signaling transcription factor TEAD
In: Biochemical Journal 475 (2018), p. 2955-2967
ISSN: 0264-6021
DOI: 10.1042/BCJ20180123
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2017
Automated cancer stem cell recognition in H and E stained tissue using convolutional neural networks and color deconvolution
SPIE Medical Imaging 2017 (Orlando, Florida, USA)
In: Proceedings Volume 10140 Medical Imaging 2017:Digital Pathology 2017
DOI: 10.1117/12.2254036
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Using automated texture features to determine the probability for masking of a tumor on mammography, but not ultrasound
In: European Journal of Medical Research 22 (2017)
ISSN: 0949-2321
DOI: 10.1186/s40001-017-0270-0
URL: https://www.ncbi.nlm.nih.gov/pmc/articles/PMC5577694/
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Automated plasmodia recognition in microscopic images for diagnosis of malaria using convolutional neural networks
Medical Imaging: Digital Pathology 2017
DOI: 10.1117/12.2249845
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Digital Mapping of the Urinary Bladder: Potential for Standardized Cystoscopy Reports.
In: Urology 104 (2017), p. 235-241
ISSN: 0090-4295
DOI: 10.1016/j.urology.2017.02.019
URL: https://www.ncbi.nlm.nih.gov/pubmed/28214573
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Analysis of Corynebacterium diphtheriae macrophage interaction: Dispensability of corynomycolic acids for inhibition of phagolysosome maturation and identification of a new gene involved in synthesis of the corynomycolic acid layer
In: PLoS ONE 12 (2017), Article No.: e0180105
ISSN: 1932-6203
DOI: 10.1371/journal.pone.0180105
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Using simulated fluorescence cell micrographs for the evaluation of cell image segmentation algorithms
In: BMC Bioinformatics 18 (2017), p. 176
ISSN: 1471-2105
DOI: 10.1186/s12859-017-1591-2
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2016
Stitching and Surface Reconstruction From Endoscopic Image Sequences: A Review of Applications and Methods
In: IEEE Journal of Biomedical and Health Informatics 20 (2016), p. 304-321
ISSN: 2168-2194
DOI: 10.1109/JBHI.2014.2384134
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Shading correction for endoscopic images using principal color components
In: International Journal of Computer Assisted Radiology and Surgery 11 (2016), p. 397-405
ISSN: 1861-6410
DOI: 10.1007/s11548-015-1273-3
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2015
The Cell-Shape-Wizard - User Guidance for Active Contour-based Cell Segmentation
BVM 2015 (Lübeck, March 15, 2015 - March 17, 2017)
In: Bildverarbeitung in der Medizin 2015
DOI: 10.1007/978-3-662-46224-9_59
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Automated classification of bone marrow cells in microscopic images for diagnosis of leukemia: A comparison of two classification schemes with respect to the segmentation quality
Medical Imaging 2015: Computer-Aided Diagnosis (Orlando, February 21, 2015 - February 26, 2015)
In: Proc. SPIE 9414, 2015
DOI: 10.1117/12.2081946
URL: https://spie.org/Publications/Proceedings/Paper/10.1117/12.2081946
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Dynamic programming for the segmentation of bone marrow cells
Bildverarbeitung für die Medizin 2015 (Lübeck, March 15, 2015 - March 17, 2015)
In: Bildverarbeitung für die Medizin 2015, Heidelberg: 2015
DOI: 10.1007/978-3-662-46224-9_62
URL: http://link.springer.com/chapter/10.1007/978-3-662-46224-9_62
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Panorama Mapping of the Esophagus from Gastroscopic Video
Bildverarbeitung für die Medizin 2015 (Lübeck, March 15, 2015 - March 17, 2015)
In: Heinz Handels, Thomas Martin Deserno, Hans-Peter Meinzer, Thomas Tolxdorff (ed.): Bildverarbeitung für die Medizin 2015, Heidelberg: 2015
DOI: 10.1007/978-3-662-46224-9_78
URL: http://link.springer.com/chapter/10.1007/978-3-662-46224-9_78
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3D Shape Reconstruction of the Esophagus from Gastroscopic Video
Bildverarbeitung für die Medizin 2015 (Lübeck, March 15, 2015 - March 17, 2015)
In: Heinz Handels, Thomas Martin Deserno, Hans-Peter Meinzer, Thomas Tolxdorff (ed.): Bildverarbeitung für die Medizin 2015, Heidelberg: 2015
DOI: 10.1007/978-3-662-46224-9_31
URL: http://link.springer.com/chapter/10.1007/978-3-662-46224-9_31
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The clinical data intelligence project
In: Informatik-Spektrum ePub (2015), p. 1-11
ISSN: 0170-6012
DOI: 10.1007/s00287-015-0913-x
URL: http://link.springer.com/article/10.1007/s00287-015-0913-x
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Review of free software tools for image analysis of fluorescence cell micrographs
In: Journal of Microscopy 257 (2015), p. 39-53
ISSN: 0022-2720
DOI: 10.1111/jmi.12184
URL: http://onlinelibrary.wiley.com/doi/10.1111/jmi.12184/pdf
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Automated high-throughput analysis of B cell spreading on immobilized antibodies with whole slide imaging
In: Current Directions in Biomedical Engineering (2015), p. 224-227
ISSN: 2364-5504
DOI: 10.1515/CDBME-2015-0056
URL: http://www.degruyter.com/view/j/cdbme.2015.1.issue-1/cdbme-2015-0056/cdbme-2015-0056.xml
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2014
Entropy based image blending for endoscopic panoram a imaging in cystoscopy
In: Biomedizinische Technik. Biomedical engineering 59 (2014), p. 595-598
ISSN: 1862-278X
URL: http://www.degruyter.com/view/j/bmte.2014.59.issue-5/issue-files/bmte.2014.59.issue-5.xml
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Development and evaluation of passive autofocus algorithms in the field of automated microscopy
In: Biomedizinische Technik 59 (2014), p. 559-562
ISSN: 0013-5585
DOI: 10.1515/bmt-2014-5008
URL: http://www.degruyter.com/view/j/bmte.2014.59.issue-5/issue-files/bmte.2014.59.issue-5.xml
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A Wizard-Based Segmentation Approach for Cochlear Implant Planning
Bildverarbeitung für die Medizin (Aachen)
In: Informatik Aktuell, Heidelberg: 2014
DOI: 10.1007/978-3-642-54111-7_49
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Cell-Shape Wizard A Concept for User-Guidance for Active Shape Segmentation in Fluorescence Cell Micrographs
In: Biomedizinische Technik 59 (2014), p. 877-880
ISSN: 0013-5585
DOI: 10.1515/bmt-2014-5011
URL: http://www.degruyter.com/view/j/bmte.2014.59.issue-5/issue-files/bmte.2014.59.issue-5.xml
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Computer-Aided Detection of Lesions in Digital Breast Tomosynthesis Images
Bildverarbeitung für die Medizin (Aachen, March 16, 2014 - March 18, 2014)
In: Thomas Martin DesernoHeinz HandelsHans-Peter MeinzerThomas Tolxdorff (ed.): Bildverarbeitung für die Medizin 2014, Heidelberg: 2014
DOI: 10.1007/978-3-642-54111-7_33
URL: https://link.springer.com/chapter/10.1007/978-3-642-54111-7_33
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Zukunft mammographie-basierter Bildgebung [Future of mammography-based imaging]
In: Radiologe (2014)
ISSN: 0033-832X
DOI: 10.1007/s00117-013-2578-2
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2013
Image stitching of sphenoid sinuses from monocular endoscopic views
12. Jahrestagung der Deutschen Gesellschaft für Computer- und Roboter Assistierte Chirurgie (CURAC) (Innsbruck, November 28, 2013 - November 30, 2013)
In: Tagungsband 12. Jahrestagung der Deutschen Gesellschaft für Computer- und Roboter Assistierte Chirurgie (CURAC) 2013
Open Access: https://www.curac.org/images/stories/Jahrestagung2013/Tagungsband/Proceedings%20CURAC%202013.pdf
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Viewpoints on Medical Image Processing: From Science to Applications
In: Current Medical Imaging Reviews 9 (2013), p. 79-88
ISSN: 1573-4056
DOI: 10.2174/1573405611309020002
URL: http://www.eurekaselect.com/111126/article
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Enhancing automated micrograph-based evaluation of LPS-stimulated macrophage spreading
In: Cytometry Part A 83 (2013), p. 409-18
ISSN: 1552-4922
DOI: 10.1002/cyto.a.22248
URL: http://onlinelibrary.wiley.com/doi/10.1002/cyto.a.22248/full
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Approaches to automatic parameter fitting in a microscopy image segmentation pipeline: An exploratory parameter space analysis
In: Journal of Pathology Informatics 4 (2013)
ISSN: 2229-5089
DOI: 10.4103/2153-3539.109831
URL: http://www.jpathinformatics.org/article.asp?issn=2153-3539;year=2013;volume=4;issue=2;spage=5;epage=5;aulast=Held
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2011
Comparison of parameter-adapted segmentation methods for fluorescence micrographs
In: Cytometry Part A 79 (2011), p. 933-945
ISSN: 1552-4922
DOI: 10.1002/cyto.a.21122
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Measurement of TLR-induced macrophage spreading by automated image analysis: Differential role of Myd88 and MAPK in early and late responses
In: Frontiers in Physiology 2 OCT (2011)
ISSN: 1664-042X
DOI: 10.3389/fphys.2011.00071
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2010
Rectification of Endoscopic Images by Gravity
In: Proc. Pattern Recognition in Medical and Health Engineering ’10, Erlangen: Kloster Banz, 2010, p. 105-107
URL: http://www5.informatik.uni-erlangen.de/Forschung/Publikationen/2010/Hoeller10-ROE.pdf
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Spatial orientation in translumenal surgery
In: Minimally Invasive Therapy & Allied Technologies 19 (2010), p. 262-273
ISSN: 1364-5706
DOI: 10.3109/13645706.2010.510762
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Orientation of endoscopic images: Rectification by gravity
In: Biomedizinische Technik 55 (2010), p. 211-217
ISSN: 0013-5585
DOI: 10.1515/BMT.2010.032
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2009
Clinical Evaluation of Endorientation:Gravity related rectification for endoscopic images
6th International Symposium on Image and Signal Processing and Analysis, ISPA 2009 (Salzburg)
URL: https://www.scopus.com/record/display.uri?eid=2-s2.0-70450273232&origin=inward
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Suppression of shock based errors with gravity related endoscopic image rectification
5th Russian-Bavarian Conference on Biomedical Engineering (München, July 1, 2009 - July 4, 2009)
In: Feussner Hubertus, et al. (ed.): Proceedings of the 5th Russian-Bavarian Conference on Biomedical Engineering, München: 2009
URL: http://www5.informatik.uni-erlangen.de/Forschung/Publikationen/2009/Hoeller09-SOS.pdf
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Endoscopic orientation correction
Heidelberg: Springer-verlag, 2009
ISBN: 978-3-642-04267-6
DOI: 10.1007/978-3-642-04268-3_57
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2006
- Göb S., Maier Tobias, Benz Michaela, Ettl Svenja, Wittenberg Thomas, Kullmann W., Nkenke Emeka, Neukam F.W., Häusler Gerd:
Automatische Segmentierung der Gewebegrenzen in 2D-Ultraschalldaten aus der Mund-Kiefer- und Gesichtschirurgie
In: Informatik aktuell (2006), p. -
ISSN: 1431-472X
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2005
Adaptive Rasterreduktion in Aufnahmen von flexiblen Endoskopen durch spektrale Maskierung
Heidelberg: 2005
(Bildvrarbeitung für die medizin 2005 - Algorithmen, Systeme, Anwendungen, Vol. Informatike aktuell)
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Interdisciplinary research! Was it worthwhile?
35th Jahrestagung der Gesellschaft fur Informatik e.V. (GI): Informatik LIVE!, INFORMATIK 2005 35th Annual Conference of the German Informatics Society (GI): Informatics LIVE!, INFORMATIK 2005 (Bonn)
URL: https://www.scopus.com/record/display.uri?eid=2-s2.0-84877320097&origin=inward
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2003
Bildverarbeitung für die Medizin 2003
Heidelberg: 2003
(Informatik Aktuell)
ISBN: 978-3-540-00619-0
DOI: 10.1007/978-3-642-18993-7
URL: http://link.springer.com/book/10.1007/978-3-642-18993-7/page/1
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2001
Automatische Stottererkennung und Klassifikation mit Hilfe von Hidden-Markov- Modellen
In: M.Gross, E. Kruse (ed.): Aktuelle phoniatrisch-pädaudiologische Aspekte 2000/2001, Heidelberg: Median-Verlag, 2001, p. 124-130
ISBN: 3-992766-74-9
URL: http://www5.informatik.uni-erlangen.de/Forschung/Publikationen/2001/Haderlein01-ASU.pdf
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2000
Automatic Stuttering Recognition using Hidden Markov Models
ICSLP 2000 (Beijing, October 16, 2000 - October 20, 2000)
In: Yuan B., Huang T., Tang X. (ed.): Proc. Int. Conf. on Spoken Language Processing, -: 2000
URL: http://www5.informatik.uni-erlangen.de/Forschung/Publikationen/2000/Noeth00-ASR.pdf
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1997
Analysis of voice-onset using active rays and hidden markov models
Advances in Quantitative Laryngoscopy (Erlangen, July 18, 1997 - July 19, 1997)
In: - (ed.): Advances in Quantitative Laryngoscopy, -: 1997
Open Access: https://pdfs.semanticscholar.org/5d96/c311c0dd4780edd67de41589cacec9226f59.pdf
URL: http://www5.informatik.uni-erlangen.de/Forschung/Publikationen/1997/Jesorsky97-AOV.pdf
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Teaching
Lecture (VORL)
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Visual Computing in Medicine 2
Until further notice, this course will take place in electronic form*. Detailed information is provided in the *StudOn-course "Visual Computing in Medicine 2 (VCMed 2) - summer term 2020".
Bis auf Weiteres findet der Kurs in elektronischer Form* statt. Weitere Informationen finden Sie im *StudOn-Kurs "Visual Computing in Medicine 2 (VCMed 2) - summer term 2020".